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| Pick | Name | Pos | School |
| 6 | Ryan Harvey | OF | Dunedin (Fla.) HS |
| 73 | Jacob
Fox |
C | Michigan |
| 103 | Anthony Richie | C | FloridaSt. |
| 133 | Darin Downs | LHP | Boynton Beach (Fla.) Santaluces
HS |
| 163 | Sean Marshall | LHP | VirginiaCommonwealth |
| 193 | Kyle Boyer | OF | Cal State Fullerton |
| 223 | Matthew Lincoln | LHP | SantaAna(Cal.) College |
| 253 | Andrew Larsen | SS | Salt Lake CC |
| 283 | Casey McGehee | 3B | Fresno St. |
| 313 | Nick Jones | 2B | VirginiaCommonwealth |
| 343 | Charles Hickman | SS | Nicholls State |
| 373 | Ryan Coultas | SS | CaliforniaDavis |
| 403 | Matthew Laporta | C | Port Charlotte (Fla.) Charlotte HS |
| 433 | Anthony McQuade | LF | FloridaState |
| 463 | Matthew Weber | RHP | Rockford Boylan HS |
| 493 | Ryan Kalita | RHP | Notre Dame |
| 523 | Trey Johnston | C | Schaumburg HS |
| 553 | Brian Carter | LHP | Washington |
| 583 | Lance Dawkins | RF | McNeese State |
| 613 | Reid Willett | RHP | Rhode Island |
| 643 | Craig Green | RHP | Bakersfield College |
| 673 | Robert Ransom | RHP | Vanderbilt |
| 703 | Samuel Fuld | CF | Stanford |
| 733 | Landon
Powell |
C | South Carolina |
| 763 | Barret Browning | LHP | Middle GeorgiaCollege |
| 793 | Jose Rios | SS | Pablo Gonzalez BendeciaHS, PR |
| 823 | Adam Tidball | C | Richmond |
| 853 | Matthew Brown | RHP | California |
| 883 | Corteze Armstrong | CF | Hiwassee College |
| 913 | Christopher Ortmeier | RHP | Flower Mound (Tex.) Marcus HS |
| 943 | Adam Tobler | RHP | Rochelle HS |
| 973 | JashaBalcom | CF | Georgia |
| 1003 | Adam Harvey | C | Grayson County CC |
| 1063 | Charles Fellows | IB | GeorgiaPerimeter College |
| 1093 | Chris Ericksen | LHP | South Suburban CC |
| 1123 | Skyler
Southwick |
RHP | Dixie College |
| 1153 | David Gresky | RF | Northwestern |
| 1183 | Daniel Lopaze | 1B | Virg. Commonwealth |
| 1213 | Doug Low | C | Foothill HS |
| 1242 | Danny Calvert | RHP | Grain Valley HS |
| 1271 | Brandon Harmon | RHP | Shadle Park HS |
| 1299 | Kevin Hankerd | 1B | South Hills HS |
| 1327 | Jose Sanchez | C | West CovinaHS |
| 1354 | Jefferies Tatford | C | St. Thomas More HS |
| 1381 | Justin Simmons | LHP | U. of Texas |
| 1408 | Tim Lincecum | RHP | Liberty HS |
| 1434 | Brian Cleveland | SS | U. of Tennessee |
| 1460 | Robert Rochelle | C | Mills E. Godwin HS |
